Aly Khaled

I'm Aly Khaled, a software engineer from Egypt with a background in biomedical engineering. At Proteinea, I build scientific and AI infrastructure for antibody engineering and computational biology.

A core part of my work is a scientific computing platform with a schema-driven registry of 40+ tools. It orchestrates more than 1,000 jobs each month across cloud GPUs and an on-premise Slurm cluster, giving researchers a consistent way to run complex computational workflows.

I also helped build an antibody design platform used across 20+ discovery projects. It brings AI-driven variant generation, interactive structure analysis, and responsive interfaces for datasets with more than one million rows into a single research workflow.

Behind those products, I work on the infrastructure that keeps research moving: containerized GPU execution, job submission and scheduling, analytics dashboards, and monitoring with Grafana and Prometheus. That work reduced recovery time by 40% and made the state of long-running experiments easier to understand.

Proteinea has shaped how I think about software. I enjoy technically deep products where infrastructure, data, AI, and product design have to work together—and where better tools give scientists more time to focus on discovery.

Earlier in my career, I built healthcare systems for more than 100,000 users and machine-learning tooling that reduced model size by 50% and training time by 70%. Those experiences taught me to build for real constraints, but scientific software is where that work now comes together.